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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015849477.1_cds_XP_016510782.1_23585
CDS Infomation

[gene=LOC107828050] [db_xref=GeneID:107828050] [protein=pachytene checkpoint protein 2 homolog] [protein_id=XP_016510782.1] [location=join(323314..323443,323555..323618,324369..324475,324590..324657,325095..325198,325276..325380,337134..337223,337318..337393,339183..339252,339344..339414,339543..339633,341042..341169,341265..341387,341468..341608)] [gbkey=CDS]
Sequence

ATGAGCGCTCCAATGGAAATCTCCATGGTCAACGCTCCTGAAGTCAACACCAGCGAGCAA
AACGGCATCGTTCCGGATCCTCCTCCACCTCCGTCACTCACATTGCCTGAAGAAAAAGTT
CTTGTTTCAGTTGAAGTTTGTTTGAAGCCTTCAAGTACAGCTCGCATTGATGATGTTACG
TTAGCTGTTGAGAGAATGCTGGAAAAGAGGAGCATGAGCTACGAGGATGGTCCAATTCCA
ATTCCAATTGATGATCTCTTTCTTGCTGAAAATGTTCAGCACATATGTGTTTGTGACACA
GATGTGTGGGTGGAGAACCGAGATATTCTTCTGTTCTGGCAAGTAAAACCAGTTGTTCAT
GTATTCCAGCTTAGTGAGGAAGGACCATGTGAAGAGTTGAGTGGGGATGGCCAGCTTTCT
ACATTTAATGAATGGATTCTTCCCGCAAAGGAATTTAATGGAATGTGGGAAAGCTTAATA
TATGAATCTGGTCTCAAGCAGAGATTGTTGCGATATGCAGCAAGTGCTTTGCTGTTTACC
GAAAAGGGAGTTAATCCATTCCTAGTATCTTGGAATCGTATTATTCTTCTGCATGGACCT
CCAGGAACGGGAAAGACATCTTTATGCAAAGCATTGGCGCAGAAGCTTTCCATACGCTTT
AGCTCTAGATACCCACAGAGCCAATTGGTCGAAGTCAATGCACATTCATTGTTCAGTAAA
TGGTTTTCTGAAAGTGGCAAGCTGGTTGCAAAGCTGTTCTCGAAAATCCAAGAAATGGTA
GAGGAAGAAAACAATCTGGTATTTGTCCTGATTGATGAAGTTGAAAGCCTTGCTGCTGCT
AGAAAAGCTGCTTTGTCTGGATCTGAACCTTCAGATTCTATCCGGGTAGTGAATGCTCTG
TTGACCCAACTTGACAAGTTGAAGTCTGCACCAAATGTCATAATTCTCACTACATCCAAC
ATCACTGCTGCTATTGATATAGCTTTTGTGGATCGTGCTGACATTAAGGCATATGTGGGA
CCACCAACTCTTCAAGCACGTTATGAGATACTAAGATCATGCTTGCAAGAGCTATTGCGT
ACTGGCGTCTTGTCAAATTCTCAGGACGCTTACCATCTTCTTCCAAATTTTGCGGGTTTG
AGGGAGAACCTGAGCATAGTTACAACTGAGTCTCAGATGTCATTACACCTTGGTAAACAA
CTCCTTGAAGCTGCAGAGGCATGTGAGGGAATGAGTGGAAGATCACTTAGAAAGCTACCA
TTCTTGGCGCACGCAGCACTTGCTAGTCCTTACAATTGTGAGCCTGGCAAATTTTTGCAT
GTAATGATGGAAACAGCTAAAAGAGAACGGTCAGAGCTCTCCGAGTGA

Peptide Sequence

PEP ID

XP_016510782.1
PEP Infomation

PREDICTED: pachytene checkpoint protein 2 homolog [Nicotiana tabacum]
Sequence

MSAPMEISMVNAPEVNTSEQNGIVPDPPPPPSLTLPEEKVLVSVEVCLKPSSTARIDDVT
LAVERMLEKRSMSYEDGPIPIPIDDLFLAENVQHICVCDTDVWVENRDILLFWQVKPVVH
VFQLSEEGPCEELSGDGQLSTFNEWILPAKEFNGMWESLIYESGLKQRLLRYAASALLFT
EKGVNPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFSSRYPQSQLVEVNAHSLFSK
WFSESGKLVAKLFSKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNAL
LTQLDKLKSAPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELLR
TGVLSNSQDAYHLLPNFAGLRENLSIVTTESQMSLHLGKQLLEAAEACEGMSGRSLRKLP
FLAHAALASPYNCEPGKFLHVMMETAKRERSELSE

Transcript Sequence

Gene sequence data has not been registered.